Index

B

Bernoulli (class in swotted.loss_metrics)

C

compute() (swotted.loss_metrics.Bernoulli method) (swotted.loss_metrics.Frobenius method) (swotted.loss_metrics.Loss method) (swotted.loss_metrics.Poisson method)

configure_optimizers() (swotted.fastswotted.fastSWoTTeDModule method) (swotted.swotted.swottedModule method)

F

fastSWoTTeDDataset (class in swotted.fastswotted) fastSWoTTeDModule (class in swotted.fastswotted) fastSWoTTeDTrainer (class in swotted.fastswotted) fit() (swotted.fastswotted.fastSWoTTeDTrainer method) (swotted.swotted.swottedTrainer method) forecast() (swotted.fastswotted.fastSWoTTeDModule method) (swotted.swotted.swottedModule method)

forward() (swotted.fastswotted.fastSWoTTeDModule method) (swotted.fastswotted.SlidingWindowConv method) (swotted.slidingWindow_model.SlidingWindow method) (swotted.swotted.swottedModule method) (swotted.temporal_regularization.TemporalDependency method) Frobenius (class in swotted.loss_metrics)

I

init_hidden() (swotted.temporal_regularization.TemporalDependency method)

init_weights() (swotted.temporal_regularization.TemporalDependency method)

L

Loss (class in swotted.loss_metrics) loss() (swotted.fastswotted.SlidingWindowConv method) (swotted.slidingWindow_model.SlidingWindow method) (swotted.temporal_regularization.TemporalDependency method)

M

module swotted swotted.decomposition_contraints swotted.fastswotted swotted.loss_metrics swotted.slidingWindow_model swotted.swotted swotted.temporal_regularization swotted.utils

N

nonnegative_projection() (in module swotted.decomposition_contraints)

normalization_constraint() (in module swotted.decomposition_contraints)

P

phenotype_uniqueness() (in module swotted.decomposition_contraints) phenotypeNonSuccession_loss() (swotted.fastswotted.fastSWoTTeDModule method) phenotypeSuccession_constraint() (in module swotted.decomposition_contraints)

Poisson (class in swotted.loss_metrics) predict_step() (swotted.fastswotted.fastSWoTTeDModule method) (swotted.swotted.swottedModule method)

R

reconstruct() (swotted.fastswotted.SlidingWindowConv method) (swotted.slidingWindow_model.SlidingWindow method)

reorderPhenotypes() (swotted.fastswotted.fastSWoTTeDModule method) (swotted.swotted.swottedModule method)

S

setMetric() (swotted.fastswotted.SlidingWindowConv method) (swotted.slidingWindow_model.SlidingWindow method) SlidingWindow (class in swotted.slidingWindow_model) SlidingWindowConv (class in swotted.fastswotted) sparsity_constraint() (in module swotted.decomposition_contraints) Subset (class in swotted.utils) success_rate() (in module swotted.utils) swotted module swotted.decomposition_contraints module swotted.fastswotted module

swotted.loss_metrics module swotted.slidingWindow_model module swotted.swotted module swotted.temporal_regularization module swotted.utils module swottedModule (class in swotted.swotted) swottedTrainer (class in swotted.swotted)

T

TemporalDependency (class in swotted.temporal_regularization) test_step() (swotted.fastswotted.fastSWoTTeDModule method) (swotted.swotted.swottedModule method)

training_step() (swotted.fastswotted.fastSWoTTeDModule method) (swotted.swotted.swottedModule method) transform3DTensorTo4D() (in module swotted.utils)

V

validation_step() (swotted.fastswotted.fastSWoTTeDModule method) (swotted.swotted.swottedModule method)